I've recently changed the seat for something that sits further forward and is thicker and sturdier, which has improved my riding position (don't feel like I'm gonna fall off the back now


I recently dropped the engine (at the recommendation of Charlie Edmonds after he road tested my scoot) to see if any part of the (Indian) casing was rubbing on the frame; unfortunately, this didn't reveal anything obvious.
I'm not quite sure what else to try/do now - as nothing else (ie. manifold, exhaust etc. is rubbing) other than maybe fitting some different engine mounts (currently have large Casa ones, with 3 small holes, which Mr Edmonds recommended and fitted when he did my engine)?!
My understanding is that so long as the nuts/bar/cones are all tight, then the rubber in the mount should soak up any vibration? I'm using offset cones (must admit I'm not sure how well they fit in the frame (ie. do they perfectly match the shape that they sit in, difficult to tell, but they do sit flush when tightened), so I assume as long as these are level on each side, I don't see why they should cause any problem?
So guys (I've emailed Charlie the same), but any ideas on what else I should be looking at/changing as never experienced anything like this before with a scoot, and annoyingly it makes it generally uncomfortable to ride, and very difficult to ride at sustained high speed (70+) on motorway/dual carriageway, because of the vibration??
Any help is most appreciated!
Cheers

Ps. it's not the motor/crank etc., as this has been fully built, dynoed and road tested by Charlie.